rma normalization Search Results


rma normalization  (Partek)
90
Partek rma normalization
Rma Normalization, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rma normalization/product/Partek
Average 90 stars, based on 1 article reviews
rma normalization - by Bioz Stars, 2026-04
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rna seq diagnostic  (GeneCentric Diagnostics)
90
GeneCentric Diagnostics rna seq diagnostic
Rna Seq Diagnostic, supplied by GeneCentric Diagnostics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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quantile normalized and rma background-corrected array data  (Partek)
90
Partek quantile normalized and rma background-corrected array data
Quantile Normalized And Rma Background Corrected Array Data, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/quantile normalized and rma background-corrected array data/product/Partek
Average 90 stars, based on 1 article reviews
quantile normalized and rma background-corrected array data - by Bioz Stars, 2026-04
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robust multi-array (rma)-normalized data  (Qlucore Inc)
90
Qlucore Inc robust multi-array (rma)-normalized data
Robust Multi Array (Rma) Normalized Data, supplied by Qlucore Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/robust multi-array (rma)-normalized data/product/Qlucore Inc
Average 90 stars, based on 1 article reviews
robust multi-array (rma)-normalized data - by Bioz Stars, 2026-04
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normalized gene expression values (rma) for tffs  (MedCalc Software Ltd)
90
MedCalc Software Ltd normalized gene expression values (rma) for tffs
Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions <t>i.e.</t> <t>PanIN</t> (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the <t>TFFs</t> were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.
Normalized Gene Expression Values (Rma) For Tffs, supplied by MedCalc Software Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/normalized gene expression values (rma) for tffs/product/MedCalc Software Ltd
Average 90 stars, based on 1 article reviews
normalized gene expression values (rma) for tffs - by Bioz Stars, 2026-04
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robust rma routine for normalization and summarization  (Partek)
90
Partek robust rma routine for normalization and summarization
Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions <t>i.e.</t> <t>PanIN</t> (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the <t>TFFs</t> were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.
Robust Rma Routine For Normalization And Summarization, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/robust rma routine for normalization and summarization/product/Partek
Average 90 stars, based on 1 article reviews
robust rma routine for normalization and summarization - by Bioz Stars, 2026-04
90/100 stars
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rma-normalized and log-transformed data  (Partek)
90
Partek rma-normalized and log-transformed data
Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions <t>i.e.</t> <t>PanIN</t> (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the <t>TFFs</t> were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.
Rma Normalized And Log Transformed Data, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rma-normalized and log-transformed data/product/Partek
Average 90 stars, based on 1 article reviews
rma-normalized and log-transformed data - by Bioz Stars, 2026-04
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intensity values normalized by rma  (Partek)
90
Partek intensity values normalized by rma
Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions <t>i.e.</t> <t>PanIN</t> (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the <t>TFFs</t> were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.
Intensity Values Normalized By Rma, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/intensity values normalized by rma/product/Partek
Average 90 stars, based on 1 article reviews
intensity values normalized by rma - by Bioz Stars, 2026-04
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microarray data normalized by rma  (Broad Institute Inc)
90
Broad Institute Inc microarray data normalized by rma
Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions <t>i.e.</t> <t>PanIN</t> (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the <t>TFFs</t> were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.
Microarray Data Normalized By Rma, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/microarray data normalized by rma/product/Broad Institute Inc
Average 90 stars, based on 1 article reviews
microarray data normalized by rma - by Bioz Stars, 2026-04
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rma normalized cel files  (Oligos Etc)
90
Oligos Etc rma normalized cel files
Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions <t>i.e.</t> <t>PanIN</t> (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the <t>TFFs</t> were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.
Rma Normalized Cel Files, supplied by Oligos Etc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rma normalized cel files/product/Oligos Etc
Average 90 stars, based on 1 article reviews
rma normalized cel files - by Bioz Stars, 2026-04
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robust multi-array (rma) normalization protocol  (Arraystar inc)
90
Arraystar inc robust multi-array (rma) normalization protocol
Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions <t>i.e.</t> <t>PanIN</t> (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the <t>TFFs</t> were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.
Robust Multi Array (Rma) Normalization Protocol, supplied by Arraystar inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/robust multi-array (rma) normalization protocol/product/Arraystar inc
Average 90 stars, based on 1 article reviews
robust multi-array (rma) normalization protocol - by Bioz Stars, 2026-04
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rma-normalized expression values  (Biotechnology Information)
90
Biotechnology Information rma-normalized expression values
Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions <t>i.e.</t> <t>PanIN</t> (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the <t>TFFs</t> were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.
Rma Normalized Expression Values, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rma-normalized expression values/product/Biotechnology Information
Average 90 stars, based on 1 article reviews
rma-normalized expression values - by Bioz Stars, 2026-04
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Image Search Results


Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions i.e. PanIN (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the TFFs were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.

Journal: EBioMedicine

Article Title: Trefoil factor(s) and CA19.9: A promising panel for early detection of pancreatic cancer

doi: 10.1016/j.ebiom.2019.03.056

Figure Lengend Snippet: Differential expression of TFF1, TFF2, and TFF3 in PC genomic datasets. (a) Representative box and whisker plots depict the comparison of normalized expression of TFF1–3 mRNA in GSE43288 dataset across normal pancreas (n = 3), PC precursor lesions i.e. PanIN (n = 13) and pancreatic tumor (PC) tissues (n = 4). (b) Representative box and whisker plots comparing normalized expression of TFF1–3 mRNA in GSE16515 dataset across normal pancreas (n = 16), and pancreatic tumor tissues ( n = 36). The interquartile range (IQR) for TFF1–3 expression is presented by box and whisker plot (horizontal line represents the 25th percentile, median and 75th percentile and whisker represents 5th and 95th percentile). Publicly available datasets were obtained from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ). Significantly elevated expression of all the TFFs were observed in pancreatic tumors. Further, the elevation in TFFs was found to be significantly higher across precursor lesions of PC. P values were determined using the Mann-Whitney U test (two-tailed). Red triangle represents outlier value.

Article Snippet: The normalized gene expression values (RMA) for TFFs in normal, PanIN, and PC were plotted using MedCalc software.

Techniques: Quantitative Proteomics, Whisker Assay, Comparison, Expressing, Gene Expression, MANN-WHITNEY, Two Tailed Test

Differential expression of TFF1–3 in tissues from precursor lesions, PC tissues from spontaneous PC mouse models and human PC. (a) Immunohistochemical analysis for individual TFF were performed on pancreatic tissue microarrays (TMAs) containing normal pancreatic tissue adjacent to tumor (NAT) (TFF1, n = 39;TFF2, n = 8; TFF3, n = 41), pancreatic cancer precursor lesions (PanIN I, II and III), (TFF1, n = 32;TFF2, n = 16; TFF3, n = 10) well-differentiated (WD) (TFF1, n = 13;TFF2, n = 13; TFF3, n = 11), moderately-differentiated (MD) (TFF1, n = 40;TFF2, n = 40; TFF3, n = 121) and poorly-differentiated (PD) (TFF1, n = 9;TFF2, n = 9;TFF3, n = 10) pancreatic tumor tissues. No expression of TFF1, TFF2, and TFF3 were observed in normal pancreatic ducts while elevated expression was observed in the ductal compartment across a spectrum of precursor lesions as well as various stages of pancreatic tumor differentiation. Scale bar for upper represents 500 μm and lower panel magnification represents 100 μm. Corresponding box and whisker plot representing quantitative H-score for TFFs expression across NAT, PanINs and pancreatic tumor tissues. Significant overexpression of TFFs was observed in pancreatic tumor tissues in comparison to normal pancreas. *** P < .0005, ** P < .005, * P < .05, determined by Welch t-Test. (b) Immunohistochemical analysis of all mouse TFF (mTFF1, mTFF2, & mTFF3) protein expression levels throughout the progression of PC in the spontaneous Kras G12D Pdx1-Cre (KC) mouse model, from 10 weeks to 30 weeks. Expression of TFF1, TFF2, and TFF3 was progressively increased from 10 to 30 weeks. Scale bars are 100 μm ( n = 3 animals/age groups).The interquartile range (IQR) for TFFs expression is presented by corresponding box and whisker plot (Middle horizontal line represents the median value). * P < .05 is determined by student t-test.

Journal: EBioMedicine

Article Title: Trefoil factor(s) and CA19.9: A promising panel for early detection of pancreatic cancer

doi: 10.1016/j.ebiom.2019.03.056

Figure Lengend Snippet: Differential expression of TFF1–3 in tissues from precursor lesions, PC tissues from spontaneous PC mouse models and human PC. (a) Immunohistochemical analysis for individual TFF were performed on pancreatic tissue microarrays (TMAs) containing normal pancreatic tissue adjacent to tumor (NAT) (TFF1, n = 39;TFF2, n = 8; TFF3, n = 41), pancreatic cancer precursor lesions (PanIN I, II and III), (TFF1, n = 32;TFF2, n = 16; TFF3, n = 10) well-differentiated (WD) (TFF1, n = 13;TFF2, n = 13; TFF3, n = 11), moderately-differentiated (MD) (TFF1, n = 40;TFF2, n = 40; TFF3, n = 121) and poorly-differentiated (PD) (TFF1, n = 9;TFF2, n = 9;TFF3, n = 10) pancreatic tumor tissues. No expression of TFF1, TFF2, and TFF3 were observed in normal pancreatic ducts while elevated expression was observed in the ductal compartment across a spectrum of precursor lesions as well as various stages of pancreatic tumor differentiation. Scale bar for upper represents 500 μm and lower panel magnification represents 100 μm. Corresponding box and whisker plot representing quantitative H-score for TFFs expression across NAT, PanINs and pancreatic tumor tissues. Significant overexpression of TFFs was observed in pancreatic tumor tissues in comparison to normal pancreas. *** P < .0005, ** P < .005, * P < .05, determined by Welch t-Test. (b) Immunohistochemical analysis of all mouse TFF (mTFF1, mTFF2, & mTFF3) protein expression levels throughout the progression of PC in the spontaneous Kras G12D Pdx1-Cre (KC) mouse model, from 10 weeks to 30 weeks. Expression of TFF1, TFF2, and TFF3 was progressively increased from 10 to 30 weeks. Scale bars are 100 μm ( n = 3 animals/age groups).The interquartile range (IQR) for TFFs expression is presented by corresponding box and whisker plot (Middle horizontal line represents the median value). * P < .05 is determined by student t-test.

Article Snippet: The normalized gene expression values (RMA) for TFFs in normal, PanIN, and PC were plotted using MedCalc software.

Techniques: Quantitative Proteomics, Immunohistochemical staining, Expressing, Whisker Assay, Over Expression, Comparison